STRINGSTRING
HMPREF9018_1980 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1980" - Uncharacterized protein in Prevotella amnii
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1980Uncharacterized protein (383 aa)    
Predicted Functional Partners:
HMPREF9018_1981
Transcriptional regulator, DeoR family (263 aa)
              0.697
HMPREF9018_0690
Acyltransferase (255 aa)
 
   
    0.556
HMPREF9018_1404
Uncharacterized protein (155 aa)
   
          0.489
cdsA
Phosphatidate cytidylyltransferase (288 aa)
       
    0.486
HMPREF9018_2051
Sodium bile acid symporter family protein (322 aa)
   
          0.484
HMPREF9018_1603
Acyltransferase (1194 aa)
       
    0.480
HMPREF9018_0577
Acyltransferase (181 aa)
       
    0.480
HMPREF9018_1013
Outer membrane protein (167 aa)
   
          0.469
raiA
Ribosomal subunit interface protein (99 aa)
   
          0.416
rnpA
Protein C5 ; RNaseP catalyzes the removal of the 5’-leader sequence from pre-tRNA to produce the mature 5’-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5’-leader sequence and broadening the substrate specificity of the ribozyme (165 aa)
   
          0.414
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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