STRINGSTRING
HMPREF9018_1993 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1993" - HDIG domain protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1993HDIG domain protein (474 aa)    
Predicted Functional Partners:
pnp
Polynucleotide phosphorylase ; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (751 aa)
   
  0.926
rnr
Ribonuclease R ; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (761 aa)
   
  0.908
HMPREF9018_1327
S1 RNA binding domain protein (523 aa)
   
  0.892
HMPREF9018_1202
Exonuclease (287 aa)
 
 
    0.826
rnz
tRNase Z ; Zinc phosphodiesterase, which displays some tRNA 3’- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3’-trailer from precursor tRNA (304 aa)
   
 
  0.813
rnhB
Ribonuclease HII ; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (200 aa)
   
 
  0.811
HMPREF9018_0857
Putative DNA polymerase III, epsilon subunit (183 aa)
   
 
    0.802
eno
2-phosphoglycerate dehydratase ; Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis (435 aa)
     
 
  0.799
HMPREF9018_1514
Putative endoribonuclease L-PSP (124 aa)
     
    0.709
HMPREF9018_1095
Putative membrane protein insertion efficiency factor ; Could be involved in insertion of integral membrane proteins into the membrane (91 aa)
     
 
    0.672
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (2%) [HD]