STRINGSTRING
HMPREF9018_1996 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1996" - Efflux transporter, outer membrane factor lipoprotein, NodT family in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1996Efflux transporter, outer membrane factor lipoprotein, NodT family (459 aa)    
Predicted Functional Partners:
HMPREF9018_1994
Efflux transporter, RND family, MFP subunit (444 aa)
 
  0.997
HMPREF9018_1995
RND transporter, HAE1 family (1074 aa)
  0.996
HMPREF9018_0229
Auxiliary transport protein, membrane fusion protein (MFP) family protein (327 aa)
   
  0.935
czcA
Heavy metal efflux pump, CzcA family (1440 aa)
 
 
  0.850
HMPREF9018_1791
ABC transporter, ATP-binding protein (732 aa)
   
 
  0.840
HMPREF9018_1546
ABC transporter, ATP-binding protein (733 aa)
   
 
  0.840
HMPREF9018_1395
ABC transporter, ATP-binding protein (736 aa)
   
 
  0.840
HMPREF9018_0529
ABC transporter, ATP-binding protein (729 aa)
   
 
  0.840
HMPREF9018_0475
ABC transporter, ATP-binding protein (725 aa)
   
 
  0.840
HMPREF9018_0245
ABC transporter transmembrane region (444 aa)
   
 
  0.840
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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