STRINGSTRING
HMPREF9018_2006 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_2006" - Sigma-54 interaction domain protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_2006Sigma-54 interaction domain protein (414 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor (503 aa)
 
     
  0.846
HMPREF9018_2005
Uncharacterized protein (182 aa)
              0.837
secG
Preprotein translocase, SecG subunit (122 aa)
              0.791
HMPREF9018_2004
Uncharacterized protein (261 aa)
              0.737
HMPREF9018_2007
Response regulator receiver domain protein (228 aa)
       
  0.544
HMPREF9018_0192
Uncharacterized protein (301 aa)
 
          0.470
HMPREF9018_1994
Efflux transporter, RND family, MFP subunit (444 aa)
 
          0.411
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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