STRINGSTRING
HMPREF9018_2020 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_2020" - Transcription termination/antitermination factor NusG in Prevotella amnii
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_2020Transcription termination/antitermination factor NusG (191 aa)    
Predicted Functional Partners:
HMPREF9018_1084
Uncharacterized protein (154 aa)
   
          0.756
HMPREF9018_0578
Uncharacterized protein (90 aa)
   
          0.717
HMPREF9018_2064
Uncharacterized protein (155 aa)
   
          0.701
HMPREF9018_0008
DNA helicase (892 aa)
   
          0.698
HMPREF9018_1763
Uncharacterized protein (155 aa)
   
          0.690
HMPREF9018_1499
Uncharacterized protein (153 aa)
   
          0.684
HMPREF9018_0725
Uncharacterized protein (159 aa)
   
          0.675
trpF
N-(5’-phosphoribosyl)anthranilate isomerase (249 aa)
              0.655
trpC
Indole-3-glycerol phosphate synthase (266 aa)
              0.649
HMPREF9018_0763
Uncharacterized protein (283 aa)
   
          0.648
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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