STRINGSTRING
HMPREF9018_2035 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_2035" - Uncharacterized protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_2035Uncharacterized protein (697 aa)    
Predicted Functional Partners:
HMPREF9018_2036
Radical SAM domain protein (378 aa)
              0.859
HMPREF9018_0479
Uncharacterized protein (279 aa)
   
          0.585
HMPREF9018_0481
Uncharacterized protein (871 aa)
   
          0.552
HMPREF9018_1896
Uncharacterized protein (396 aa)
   
          0.537
HMPREF9018_1808
Uncharacterized protein (486 aa)
   
          0.511
HMPREF9018_1740
Renal dipeptidase family protein (618 aa)
   
          0.502
HMPREF9018_0823
Uncharacterized protein (389 aa)
   
          0.496
HMPREF9018_0820
TonB-linked outer membrane protein, SusC/RagA family (1036 aa)
   
          0.495
HMPREF9018_1533
Uncharacterized protein (139 aa)
   
          0.490
HMPREF9018_0761
Uncharacterized protein (390 aa)
   
          0.464
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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