STRINGSTRING
HMPREF9018_2042 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_2042" - Cupin domain protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_2042Cupin domain protein (110 aa)    
Predicted Functional Partners:
HMPREF9018_2043
TonB-dependent receptor plug domain protein (1086 aa)
              0.722
HMPREF9018_1677
Uncharacterized protein (163 aa)
   
          0.706
HMPREF9018_1386
Uncharacterized protein (126 aa)
   
          0.687
HMPREF9018_1625
Uncharacterized protein (130 aa)
   
          0.679
HMPREF9018_0662
Uncharacterized protein (185 aa)
   
          0.668
HMPREF9018_2045
Uncharacterized protein (157 aa)
 
          0.618
HMPREF9018_0725
Uncharacterized protein (159 aa)
   
          0.611
HMPREF9018_1388
Uncharacterized protein (49 aa)
   
          0.597
HMPREF9018_0763
Uncharacterized protein (283 aa)
   
          0.559
HMPREF9018_1199
Tetratricopeptide repeat protein (552 aa)
   
          0.547
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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