STRINGSTRING
HMPREF9018_2054 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_2054" - Tetratricopeptide repeat protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_2054Tetratricopeptide repeat protein (397 aa)    
Predicted Functional Partners:
HMPREF9018_0408
Uncharacterized protein (688 aa)
   
          0.764
HMPREF9018_1199
Tetratricopeptide repeat protein (552 aa)
   
          0.758
HMPREF9018_1018
BNR/Asp-box repeat protein (445 aa)
   
          0.751
HMPREF9018_0967
Uncharacterized protein (265 aa)
   
          0.747
HMPREF9018_0879
Sporulation and cell division repeat protein (244 aa)
   
          0.747
HMPREF9018_0893
Tetratricopeptide repeat protein (368 aa)
   
          0.744
HMPREF9018_2055
SNARE-like domain protein (209 aa)
              0.741
HMPREF9018_0279
Uncharacterized protein (1706 aa)
   
          0.737
HMPREF9018_1574
Uncharacterized protein (384 aa)
   
          0.732
glnS
Glutamine--tRNA ligase (572 aa)
              0.731
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (6%) [HD]