STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMU08060Putative integral membrane protein; evidence=ISS; db_xref=cjejuni:Cj0313; date=20070321; method=automatic:reciprocal fasta. (354 aa)    
Predicted Functional Partners:
HMU05360
Putative integral membrane protein, permease YjgP/YjgQ family; evidence=IEA; db_xref=cjejuni:Cj0826; date=20070321; method=automatic:top fasta hit.
  
  
 0.913
HMU10610
ABC-transporter ATP-binding protein; evidence=ISS; db_xref=cjejuni:Cj0669; date=20070321; method=automatic:reciprocal fasta.
   
 0.879
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
       0.814
rplY
Ribosomal protein L25, ctc protein homolog; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
       0.814
HMU11510
Putative hypothetical protein; evidence=ISS; db_xref=cjejuni:Cj0649; date=20070321; method=automatic:reciprocal fasta.
 
   
 0.786
hemD
Putative Uroporphyrinogen-III synthase, HemD; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
     0.770
HMU05080
Putative hypothetical protein; evidence=ISS; db_xref=cjejuni:Cj1009c; date=20070321; method=automatic:reciprocal fasta.
  
     0.758
flgL
Homologous to H. pylori and H. hepaticus hook-associated protein 3.
  
 
   0.754
HMU05250
Putative hypothetical protein; evidence=ISS; db_xref=cjejuni:Cj0881c; date=20070321; method=automatic:reciprocal fasta.
  
     0.751
HMU04120
Putative outer membrane component of efflux system; evidence=IEA; db_xref=cjejuni:Cj1031; date=20070321; method=automatic:top fasta hit.
  
     0.748
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.