STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recODNA repair protein recO; Involved in DNA repair and RecF pathway recombination. (242 aa)    
Predicted Functional Partners:
recR
Recombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
 
 0.973
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
 
  
 0.735
Bcop_2192
KEGG: bth:BT_0316 putative hemin receptor; SPTR: Putative hemin receptor; IMG reference gene:2504107913; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
     0.709
Bcop_2404
KEGG: bfr:BF1077 peptidyl-prolyl cis-trans isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase; IMG reference gene:2504108136.
 
   
 0.691
Bcop_2399
KEGG: bth:BT_4376 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108131.
  
     0.690
Bcop_0267
KEGG: bth:BT_3446 cell division protein FtsQ; SPTR: Putative uncharacterized protein; manually curated; IMG reference gene:2504105926.
  
     0.687
Bcop_0938
Protein of unknown function DUF721; InterPro IPR007922; KEGG: bfs:BF0878 hypothetical protein; PFAM: Protein of unknown function DUF721/UPF0232; SPTR: Putative uncharacterized protein; IMG reference gene:2504106639; PFAM: Protein of unknown function (DUF721).
  
     0.677
Bcop_1408
Surface antigen (D15); COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184; KEGG: bfs:BF2374 putative surface membrane protein; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Putative surface membrane protein; IMG reference gene:2504107117; PFAM: Surface antigen.
 
     0.662
Bcop_0984
KEGG: bfs:BF2638 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106685; PFAM: RNA polymerase Rpb6.
 
    0.655
rimP
Ribosome maturation factor rimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
 
     0.638
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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