STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0328ABC transporter related protein; COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR003593:IPR003439; KEGG: bth:BT_3248 putative metal ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504105989; PFAM: ABC transporter. (254 aa)    
Predicted Functional Partners:
Bcop_0675
ABC-3 protein; COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: bfs:BF0655 putative ABC transporter membrane protein; PFAM: ABC-3; SPTR: Zinc ABC transporter permease; IMG reference gene:2504106355; PFAM: ABC 3 transport family.
 
 0.999
Bcop_0327
Periplasmic solute binding protein; COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; InterPro IPR006127; KEGG: bvu:BVU_1101 putative metal ABC transporter substrate-binding precursor; PFAM: ABC transporter metal-binding lipoprotein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105988; PFAM: Periplasmic solute binding protein family.
 
 
 0.998
purD
COGs: COG0151 Phosphoribosylamine-glycine ligase; HAMAP: Phosphoribosylglycinamide synthetase; InterPro IPR000115:IPR020562:IPR020561:IPR020560; KEGG: bth:BT_3253 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; PRIAM: Phosphoribosylamine--glycine ligase; SPTR: Phosphoribosylamine--glycine ligase; TIGRFAM: Phosphoribosylglycinamide synthetase; IMG reference gene:2504105984; PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribo [...]
       0.795
Bcop_0324
KEGG: bth:BT_3252 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105985.
       0.795
Bcop_0325
COGs: COG1238 membrane protein; InterPro IPR015414; KEGG: bvu:BVU_1097 putative integral membrane protein; PFAM: SNARE associated Golgi protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105986; PFAM: SNARE associated Golgi protein.
       0.795
Bcop_0326
Protein of unknown function DUF752; COGs: COG4121 conserved hypothetical protein; InterPro IPR008471; KEGG: bth:BT_3250 hypothetical protein; PFAM: Domain of unknown function DUF752; SPTR: Putative uncharacterized protein; IMG reference gene:2504105987; PFAM: Protein of unknown function (DUF752).
       0.795
Bcop_0322
Dipeptidyl-peptidase IV; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469:IPR001375; KEGG: bfr:BF0085 dipeptidyl peptidase IV; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; Peptidase S9, prolyl oligopeptidase, catalytic domain; PRIAM: Dipeptidyl-peptidase IV; SPTR: Putative uncharacterized protein; manually curated; IMG reference gene:2504105983; PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region.
       0.764
Bcop_0321
rRNA (guanine-N(2)-)-methyltransferase; COGs: COG0116 N6-adenine-specific DNA methylase; InterPro IPR004114:IPR000241; KEGG: bfs:BF0098 putative methylase; PFAM: Putative RNA methylase; THUMP; PRIAM: rRNA (guanine-N(2)-)-methyltransferase; SMART: THUMP; SPTR: Putative uncharacterized protein; IMG reference gene:2504105982; PFAM: Putative RNA methylase family UPF0020; THUMP domain; Belongs to the methyltransferase superfamily.
  
    0.712
Bcop_0329
KEGG: bth:BT_3247 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105990; PFAM: Protein of unknown function (DUF2723).
       0.666
Bcop_0320
COGs: COG1045 Serine acetyltransferase; InterPro IPR001451; KEGG: bfs:BF0099 putative serine acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat; PRIAM: Serine O-acetyltransferase; SPTR: Serine acetyltransferase; IMG reference gene:2504105981; TIGRFAM: serine O-acetyltransferase.
       0.660
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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