STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG68192.1Putative secreted glycosidase; PMID:8299175; PMID:8837440. (458 aa)    
Predicted Functional Partners:
SCAB_3871
Putative secreted protein.
 
     0.726
CBG68189.1
Putative secreted protein.
 
     0.725
CBG71480.1
Putative membrane protein.
  
   
 0.702
SCAB_6011
Putative glycosyl hydrolase/xylanase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.700
CBG74052.1
Putative secreted protein.
  
     0.691
CBG69077.1
Conserved hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.686
SCAB_6001
Putative secreted hydrolase; TTA-Leu codon(s) 30 may indicate regulation by BldA.
  
     0.659
CBG74900.1
Putative xylanase A; TTA-Leu codon(s) 21 may indicate regulation by BldA.
  
     0.641
CBG71419.1
Putative secreted carbohydrate-binding protein.
  
     0.638
CBG75195.1
Putative secreted lyase.
  
     0.634
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.