STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amlBSecreted alpha-amylase; PMID:8486279; PMID:9495007; PMID:3266752; PMID:3500166; PMID:1900915. (460 aa)    
Predicted Functional Partners:
CBG73660.1
Putative alpha amylase; PMID:9044287.
 
  
 0.954
glgX
Putative glycogen debranching enzyme; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.936
pep2A
Conserved hypothetical Pep2A protein; PMID:10821190; PMID:15378530; cluster 0601 with SCAB83371; PMID:10821190 in S. coelicolor, clusters of pep1-treS-pep2-glgB genes; glgB involved in aerial mycelium development.
  
 0.933
pep2B
Conserved hypothetical Pep2B protein; PMID:10821190; cluster 0601 with SCAB28001; PMID:10821190 in S. coelicolor, clusters of pep1-treS-pep2-glgB genes; glgB involved in aerial mycelium development.
  
 0.933
CBG69884.1
Putative glycosyl hydrolase; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.931
glgP
Putative glycogen phosphorylase.
  
 0.928
CBG69118.1
Glycan debranching enzyme; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.927
glgB1
Putative 1,4-a-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.927
glgB2
Putative 1,4-a-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.927
CBG72974.1
Putative 4-alpha-glucanotransferase.
  
 
 0.918
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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