STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG74885.1Putative arabinofuranosidase. (492 aa)    
Predicted Functional Partners:
SCAB_6011
Putative glycosyl hydrolase/xylanase; Belongs to the glycosyl hydrolase 43 family.
   
 0.912
SCAB_6021
Putative glycosyl hydrolase.
   0.813
SCAB_6001
Putative secreted hydrolase; TTA-Leu codon(s) 30 may indicate regulation by BldA.
 
   0.796
CBG75198.1
Putative poly(3-hydroxyalkanoate) depolymerase C precursor.
 
 
   0.789
CBG75195.1
Putative secreted lyase.
 
     0.767
xlnB
Putative secreted endo-1,4-beta-xylanase B (xylanase B); PMID:7533741; PMID:1743521; PMID:15650852; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.755
CBG75159.1
Putative secreted endo-1,4-beta-xylanase (EC 3.2.1.8).
 
     0.717
CBG75907.1
Putative secreted cellulose-binding protein.
  
     0.706
celB
Putative secreted cellulase B precursor; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
  
     0.699
CBG75942.1
Putative secreted cellulase B precursor; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
  
     0.691
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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