STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_12828Uncharacterized protein. (524 aa)    
Predicted Functional Partners:
TCAL_12580
Uncharacterized protein.
    
0.895
TCAL_00143
Uncharacterized protein.
    
 0.872
TCAL_02285
SAC domain-containing protein.
 
      0.574
TCAL_05783
BHLH domain-containing protein.
    
 0.528
TCAL_03962
BHLH domain-containing protein.
    
 0.528
TCAL_12192
BHLH domain-containing protein.
   
 0.501
TCAL_11525
BHLH domain-containing protein.
    
 0.497
TCAL_10165
BHLH domain-containing protein.
    
 0.497
TCAL_10968
Homeobox domain-containing protein.
   
 
 0.486
TCAL_01116
Uncharacterized protein.
    
 0.484
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.