STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_03997N_BRCA1_IG domain-containing protein. (234 aa)    
Predicted Functional Partners:
TCAL_09633
Uncharacterized protein.
    
 0.875
TCAL_04466
Uncharacterized protein.
    
 0.875
TCAL_04618
TPR_REGION domain-containing protein.
     
 0.811
TCAL_06351
Ribosomal_S27 domain-containing protein.
    
 0.793
TCAL_08416
Uncharacterized protein.
    
 0.679
TCAL_11037
Uncharacterized protein.
    
 0.679
TCAL_04642
PB1 domain-containing protein.
    
 0.666
TCAL_15088
PB1 domain-containing protein.
    
 0.666
TCAL_05480
Uncharacterized protein.
    
 0.666
TCAL_14702
Uncharacterized protein.
    
 0.666
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.