STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_07950VPS9 domain-containing protein. (1576 aa)    
Predicted Functional Partners:
TCAL_10698
Uncharacterized protein.
    
 0.983
TCAL_06498
Uncharacterized protein.
    
 0.977
TCAL_08043
Deacetylase sirtuin-type domain-containing protein.
    
 0.919
TCAL_08670
Uncharacterized protein.
    
 0.859
TCAL_08793
Uncharacterized protein.
    
 0.859
TCAL_06838
Xpo1 domain-containing protein.
    
 
 0.796
TCAL_11299
Xpo1 domain-containing protein.
    
 
 0.796
TCAL_01043
Importin N-terminal domain-containing protein.
    
 
 0.796
TCAL_06066
Uncharacterized protein.
   
 0.775
TCAL_07152
Uncharacterized protein.
    
 0.767
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.