STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_08291RRM domain-containing protein. (166 aa)    
Predicted Functional Partners:
TCAL_14831
Uncharacterized protein.
   
 0.995
TCAL_05586
RRM domain-containing protein.
   
 0.991
TCAL_06416
RRM domain-containing protein.
   
 0.988
TCAL_01177
Uncharacterized protein.
   
0.986
TCAL_04758
Slu7 domain-containing protein.
    
 0.984
TCAL_03398
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.983
TCAL_12182
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.978
TCAL_06250
RRM domain-containing protein.
   
 0.974
TCAL_09988
Uncharacterized protein.
    
  0.964
TCAL_03626
Uncharacterized protein.
   
 0.952
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.