STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_00856WD_REPEATS_REGION domain-containing protein. (455 aa)    
Predicted Functional Partners:
TCAL_09599
Polynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus.
 
  
  0.799
TCAL_00609
HORMA domain-containing protein.
   
 0.680
TCAL_09754
Uncharacterized protein.
   
 0.679
TCAL_01844
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
 0.664
TCAL_03954
Uncharacterized protein.
    
 0.664
TCAL_10504
Uncharacterized protein.
   
 0.664
TCAL_11360
TFIID_20kDa domain-containing protein.
    
 0.664
TCAL_08045
Uncharacterized protein; Belongs to the cyclin family.
   
 0.663
TCAL_05091
Uncharacterized protein; Belongs to the cyclin family.
   
 0.663
TCAL_09121
Cyclin N-terminal domain-containing protein.
   
 0.663
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.