STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_04458Uncharacterized protein. (429 aa)    
Predicted Functional Partners:
TCAL_11192
Uncharacterized protein.
  
  
0.685
TCAL_01335
Uncharacterized protein.
  
  
0.679
TCAL_03209
Uncharacterized protein.
    
 0.504
TCAL_12975
PID domain-containing protein.
    
 0.504
TCAL_08285
Uncharacterized protein.
    
 0.482
TCAL_02777
Protein kinase domain-containing protein.
    
  0.482
TCAL_01113
Uncharacterized protein.
    
  0.482
TCAL_03130
Uncharacterized protein.
    
 0.482
TCAL_03351
BHLH domain-containing protein.
    
 
 0.412
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.