STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_02898Uncharacterized protein. (538 aa)    
Predicted Functional Partners:
TCAL_00132
Uncharacterized protein.
  
 
 0.868
TCAL_08120
Uncharacterized protein.
  
 0.843
TCAL_04743
Uncharacterized protein.
  
 0.819
TCAL_09417
Uncharacterized protein.
    
  0.746
TCAL_12886
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
  
  
 0.734
TCAL_09593
Elp3 domain-containing protein.
    
  0.717
TCAL_09685
Glutamine amidotransferase type-2 domain-containing protein.
    
 0.635
TCAL_10195
Uncharacterized protein.
    
 0.612
TCAL_11351
Uncharacterized protein.
    
 0.612
TCAL_00773
Tyrosine--tRNA ligase.
   
  
 0.528
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.