STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_01288RAI1 domain-containing protein. (435 aa)    
Predicted Functional Partners:
TCAL_12611
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
   
 
 0.993
TCAL_00100
CID domain-containing protein.
    
 
 0.976
TCAL_00405
Uncharacterized protein.
   
   0.942
TCAL_17154
XRN_N domain-containing protein.
   
 
 0.936
TCAL_02754
CID domain-containing protein.
    
 
 0.840
TCAL_16867
5'-3' exoribonuclease 1.
    
 
 0.668
TCAL_01668
CLP1_P domain-containing protein.
   
 
 0.647
TCAL_03748
Nudix hydrolase domain-containing protein.
      
 0.596
TCAL_02372
Uncharacterized protein.
   
 
 0.587
TCAL_06387
mRNA cap guanine-N7 methyltransferase.
    
 
 0.585
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.