STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_12592Uncharacterized protein. (1260 aa)    
Predicted Functional Partners:
TCAL_05846
Uncharacterized protein.
    
 0.617
TCAL_06066
Uncharacterized protein.
  
 0.603
TCAL_02016
Autophagy protein 5; Involved in autophagic vesicle formation.
      
 0.596
TCAL_09327
Signal peptidase complex catalytic subunit SEC11.
     
 0.546
TCAL_00516
Peptidase_M3 domain-containing protein.
      
 0.540
TCAL_10379
Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.
      
 0.537
TCAL_11121
RING-type domain-containing protein.
    
 0.527
TCAL_12706
RING-type domain-containing protein.
    
  0.526
TCAL_17157
RING-type domain-containing protein.
    
  0.526
TCAL_01329
RING-type domain-containing protein.
    
  0.526
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.