STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_00035Vesicle transport protein; May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. Belongs to the SFT2 family. (236 aa)    
Predicted Functional Partners:
TCAL_11340
t-SNARE coiled-coil homology domain-containing protein.
    
 
 0.643
TCAL_09361
Uncharacterized protein.
   
 
 0.604
TCAL_09256
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 
 0.555
TCAL_10882
t-SNARE coiled-coil homology domain-containing protein.
    
 
 0.451
TCAL_02484
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
   0.414
TCAL_10667
Uncharacterized protein.
      
 0.410
TCAL_16289
Uncharacterized protein.
      
 0.400
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.