STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_15381Uncharacterized protein. (479 aa)    
Predicted Functional Partners:
TCAL_03217
Uncharacterized protein.
   
 0.732
TCAL_06667
Uncharacterized protein.
   
 0.708
TCAL_16413
Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family.
   
 0.683
TCAL_03319
Uncharacterized protein.
   
 0.677
TCAL_04175
Uncharacterized protein.
    
 0.612
TCAL_07035
Uncharacterized protein.
   
  0.573
TCAL_07371
Uncharacterized protein.
   
  0.569
TCAL_11611
Uncharacterized protein; Belongs to the peptidase M16 family.
   
 0.557
CYC1
Cytochrome c1.
   
 0.556
TCAL_07917
Uncharacterized protein.
   
 0.551
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.