STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_05954Uncharacterized protein. (365 aa)    
Predicted Functional Partners:
TCAL_06390
PID domain-containing protein.
   
 0.576
TCAL_02628
Uncharacterized protein.
   
 0.462
TCAL_11690
Uncharacterized protein.
   
 0.462
TCAL_13531
Asp_Arg_Hydrox domain-containing protein.
   
  0.445
TCAL_03448
BTB domain-containing protein.
   
  0.445
TCAL_17315
VWFC domain-containing protein.
   
  0.445
TCAL_17316
Uncharacterized protein.
   
  0.445
TCAL_07524
Uncharacterized protein.
   
  0.445
TCAL_06066
Uncharacterized protein.
    
 0.442
TCAL_10721
Uncharacterized protein.
    
  0.438
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.