STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_06564RT_RNaseH domain-containing protein. (558 aa)    
Predicted Functional Partners:
TCAL_01790
Uncharacterized protein.
    
 0.837
TCAL_02091
Uncharacterized protein.
    
 0.564
TCAL_13628
WD_REPEATS_REGION domain-containing protein.
    
 0.563
TCAL_06591
CRC domain-containing protein.
    
 0.561
TCAL_00053
DIRP domain-containing protein.
    
 0.552
TCAL_16287
Uncharacterized protein.
    
  0.513
TCAL_01056
Uncharacterized protein.
    
 0.484
TCAL_01765
E2F_TDP domain-containing protein.
    
 0.481
TCAL_11117
E2F_TDP domain-containing protein.
    
  0.448
TCAL_04471
SAS-6_N domain-containing protein.
    
  0.444
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.