STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_16754Nuclear receptor domain-containing protein. (720 aa)    
Predicted Functional Partners:
TCAL_15661
PAS domain-containing protein.
    
 0.710
TCAL_03513
Uncharacterized protein.
   
0.688
TCAL_06123
Uncharacterized protein.
    
 0.682
TCAL_03667
NR LBD domain-containing protein.
   
 0.652
TCAL_17183
Uncharacterized protein.
   
 0.652
TCAL_16126
Uncharacterized protein.
    
 0.623
TCAL_01878
Uncharacterized protein.
    
 0.546
TCAL_01880
KIX domain-containing protein.
    
 0.546
TCAL_10046
CS domain-containing protein.
   
  0.523
TCAL_04391
Uncharacterized protein.
    
 0.481
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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