TCAL_09374 protein (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TCAL_09374

40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (302 aa)

Predicted Functional Partners:

TCAL_02130

0.999

TCAL_06261

0.999

TCAL_13152

0.999

TCAL_14984

0.999

TCAL_08875

0.999

TCAL_03705

0.999

TCAL_00865

0.999

TCAL_00414

0.999

TCAL_04938

0.999

TCAL_13107

0.999

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00414	TCAL_00865	A0A553NB04	A0A553NAT1	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00414	TCAL_02130	A0A553NB04	A0A553N6A6	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.999
TCAL_00414	TCAL_03705	A0A553NB04	A0A553N9Q7	Uncharacterized protein.	Ribosomal_L14e domain-containing protein.	0.999
TCAL_00414	TCAL_04938	A0A553NB04	A0A553NBD9	Uncharacterized protein.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.999
TCAL_00414	TCAL_06261	A0A553NB04	A0A553N7S6	Uncharacterized protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
TCAL_00414	TCAL_08875	A0A553NB04	A0A553N963	Uncharacterized protein.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.999
TCAL_00414	TCAL_09374	A0A553NB04	A0A553PSQ6	Uncharacterized protein.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999
TCAL_00414	TCAL_13107	A0A553NB04	A0A553NBM0	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.999
TCAL_00414	TCAL_13152	A0A553NB04	A0A553N855	Uncharacterized protein.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
TCAL_00414	TCAL_14984	A0A553NB04	A0A553N8G2	Uncharacterized protein.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.999
TCAL_00865	TCAL_00414	A0A553NAT1	A0A553NB04	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00865	TCAL_02130	A0A553NAT1	A0A553N6A6	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.999
TCAL_00865	TCAL_03705	A0A553NAT1	A0A553N9Q7	Uncharacterized protein.	Ribosomal_L14e domain-containing protein.	0.999
TCAL_00865	TCAL_04938	A0A553NAT1	A0A553NBD9	Uncharacterized protein.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.999
TCAL_00865	TCAL_06261	A0A553NAT1	A0A553N7S6	Uncharacterized protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
TCAL_00865	TCAL_08875	A0A553NAT1	A0A553N963	Uncharacterized protein.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.999
TCAL_00865	TCAL_09374	A0A553NAT1	A0A553PSQ6	Uncharacterized protein.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999
TCAL_00865	TCAL_13107	A0A553NAT1	A0A553NBM0	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.999
TCAL_00865	TCAL_13152	A0A553NAT1	A0A553N855	Uncharacterized protein.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
TCAL_00865	TCAL_14984	A0A553NAT1	A0A553N8G2	Uncharacterized protein.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.999