STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_07798PAP2_C domain-containing protein. (505 aa)    
Predicted Functional Partners:
TCAL_06621
Lipid_DES domain-containing protein; Belongs to the fatty acid desaturase type 1 family. DEGS subfamily.
   
 
 0.797
TCAL_09510
DAGKc domain-containing protein.
     
 0.691
TCAL_10005
Uncharacterized protein.
     
 0.639
TCAL_08267
Uncharacterized protein.
     
 0.604
TCAL_00010
Uncharacterized protein.
     
 0.593
TCAL_02291
Endo/exonuclease/phosphatase domain-containing protein.
     
 0.578
TCAL_08531
Neutral ceramidase.
 
   
 0.570
TCAL_02996
Neutral ceramidase.
 
   
 0.558
TCAL_01150
Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.
     
 0.552
TCAL_06304
Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.
     
 0.552
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.