STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC76750.1Oxygen tolerance. (481 aa)    
Predicted Functional Partners:
SKC38588.1
Cytochrome c-type biogenesis protein CcmF.
 
 
 0.919
SKC82030.1
TolB amino-terminal domain-containing protein.
  
 0.800
SKC57922.1
Signal transduction histidine kinase.
   
 0.785
SKC57929.1
Hypothetical protein; Partial gene; manually curated.
   
 0.785
SKC85619.1
Tetratricopeptide repeat-containing protein.
  
  0.774
SKC86625.1
Hypothetical protein.
  
     0.771
SKC73879.1
Hypothetical protein.
  
     0.767
SKC77865.1
SH3 domain-containing protein.
 
     0.767
SKC86537.1
Hypothetical protein.
  
     0.767
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
      0.761
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.