STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC86013.1AraC-type DNA-binding protein. (288 aa)    
Predicted Functional Partners:
SKC57892.1
AraC-type DNA-binding protein.
  
   0.765
SKC71790.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
 0.760
SKC83771.1
Helix-turn-helix domain-containing protein.
  
   0.731
SKC57922.1
Signal transduction histidine kinase.
    
 0.726
SKC57929.1
Hypothetical protein; Partial gene; manually curated.
    
 0.726
SKC82036.1
AraC-like ligand binding domain-containing protein.
  
   0.718
SKC57086.1
Regulatory protein, gntR family.
  
  
 0.699
SKC76914.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.696
SKC61198.1
AraC-type DNA-binding protein.
  
   0.678
SKC66621.1
AraC-type DNA-binding protein.
 
   0.665
Your Current Organism:
Ohtaekwangia koreensis
NCBI taxonomy Id: 688867
Other names: Bacteroidetes bacterium 3B-2, CCUG 58939, DSM 25262, KCTC 23018, O. koreensis, Ohtaekwangia koreensis Yoon et al. 2011, strain 3B-2
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