STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vacJLipoprotein VacJ precursor. (391 aa)    
Predicted Functional Partners:
ttg2D
Toluene tolerance protein Ttg2D.
 
 
 
 0.960
mlaD
Toluene ABC transport system permease protein.
 
   
 0.940
GLE_0155
Hypothetical protein.
    
 
 0.905
GLE_5234
Toluene ABC transport system permease protein.
 
   
 0.786
GLE_5237
Hypothetical protein.
     
 0.767
GLE_5233
Toluene ABC transporter.
 
   
 0.701
GLE_5239
Hypothetical protein.
       0.661
ccmF
Cytochrome c-type biogenesis protein.
 
   
 0.497
gltB
Glutamine amidotransferases class-II/glutamate synthase.
       0.478
dksA
RNA polymerase-binding protein DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression.
  
    0.477
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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