STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_5295Prolyl 4-hydroxylase, alpha subunit. (249 aa)    
Predicted Functional Partners:
GLE_2622
Isochorismatase.
   
    0.774
GLE_4729
Hypothetical protein.
  
     0.718
GLE_2011
Zn-dependent enzyme from deacylase/carboxypeptidase superfamily.
  
     0.659
GLE_4937
Dipeptidyl peptidase IV/S9A/B/C peptidase domain protein.
  
     0.658
GLE_4205
Membrane protein.
  
     0.565
GLE_5352
ABC transporter sodium permease, putative.
  
     0.560
lta4h
Leukotriene A-4 hydrolase.
  
     0.554
GLE_0328
TonB-dependent receptor.
  
    0.539
GLE_0364
Bacterial membrane flanked domain.
  
     0.523
GLE_1580
Hypothetical protein.
  
     0.520
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.