STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tk-ptpProtein-tyrosine phosphatase. (147 aa)    
Predicted Functional Partners:
TK0728
Hypothetical membrane protein, conserved.
  
 0.948
TK0239
Putative tRNA-binding protein.
       0.796
TK1777
Phosphopentomutase; Catalyzes the conversion of deoxyribose 1-phosphate to deoxyribose 5-phosphate. Shows also weak activity with glucose 1- phosphate and mannose 1-phosphate. Could be involved in pentose biosynthesis.
   
  
 0.789
TK0240
Arginase; Belongs to the arginase family.
  
  
 0.788
TK2151
Archaeal transcription regulator; Putative transcriptional regulator.
      
 0.769
psmB1
Proteasome, beta subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
    
 0.755
rpl40e
LSU ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family.
   
  0.697
TK0951
XPA-binding protein 1 homolog.
  
 0.686
TK0237
Hypothetical membrane protein.
       0.685
TK0012
GTP-binding protein.
  
 0.661
Your Current Organism:
Thermococcus kodakarensis
NCBI taxonomy Id: 69014
Other names: Pyrococcus sp. (strain KOD1), Pyrococcus sp. KOD1, T. kodakarensis KOD1, Thermococcus kodakaraensis KOD1, Thermococcus kodakarensis KOD1, Thermococcus kodakarensis str. KOD1, Thermococcus kodakarensis strain KOD1
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.