Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TK0551 | TK0552 | TK0551 | TK0552 | D-isomer specific 2-hydroxyacid dehydrogenase. | Hypothetical protein. | 0.790 |
TK0551 | TK1449 | TK0551 | TK1449 | D-isomer specific 2-hydroxyacid dehydrogenase. | Cystathionine gamma-synthase. | 0.719 |
TK0551 | TK1687 | TK0551 | TK1687 | D-isomer specific 2-hydroxyacid dehydrogenase. | Cysteine synthase. | 0.720 |
TK0551 | TK1966 | TK0551 | TK1966 | D-isomer specific 2-hydroxyacid dehydrogenase. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.926 |
TK0551 | apgM | TK0551 | TK0866 | D-isomer specific 2-hydroxyacid dehydrogenase. | 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.914 |
TK0551 | glyA | TK0551 | TK0528 | D-isomer specific 2-hydroxyacid dehydrogenase. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with a modified folate serving as the one-carbon carrier. Also exhibits a pteridine-independent aldolase activity toward beta- hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.735 |
TK0551 | proS | TK0551 | TK0550 | D-isomer specific 2-hydroxyacid dehydrogenase. | prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). | 0.736 |
TK0551 | serK | TK0551 | TK0378 | D-isomer specific 2-hydroxyacid dehydrogenase. | Chromosome partitioning protein ParB homolog; Free serine kinase that uses ADP to phosphorylate L-serine to yield O-phospho-L-serine and AMP. | 0.640 |
TK0551 | tdh | TK0551 | TK0916 | D-isomer specific 2-hydroxyacid dehydrogenase. | Threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate. To a lesser extent, also catalyzes the oxidation of L-serine; Belongs to the zinc-containing alcohol dehydrogenase family. | 0.736 |
TK0551 | tiaS | TK0551 | TK0553 | D-isomer specific 2-hydroxyacid dehydrogenase. | Nucleic acid-binding protein, containing OB-fold domain; ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA. | 0.608 |
TK0552 | TK0551 | TK0552 | TK0551 | Hypothetical protein. | D-isomer specific 2-hydroxyacid dehydrogenase. | 0.790 |
TK0552 | proS | TK0552 | TK0550 | Hypothetical protein. | prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). | 0.557 |
TK0552 | tiaS | TK0552 | TK0553 | Hypothetical protein. | Nucleic acid-binding protein, containing OB-fold domain; ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA. | 0.592 |
TK1449 | TK0551 | TK1449 | TK0551 | Cystathionine gamma-synthase. | D-isomer specific 2-hydroxyacid dehydrogenase. | 0.719 |
TK1449 | TK1687 | TK1449 | TK1687 | Cystathionine gamma-synthase. | Cysteine synthase. | 0.998 |
TK1449 | TK1966 | TK1449 | TK1966 | Cystathionine gamma-synthase. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.861 |
TK1449 | glyA | TK1449 | TK0528 | Cystathionine gamma-synthase. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with a modified folate serving as the one-carbon carrier. Also exhibits a pteridine-independent aldolase activity toward beta- hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.818 |
TK1449 | serK | TK1449 | TK0378 | Cystathionine gamma-synthase. | Chromosome partitioning protein ParB homolog; Free serine kinase that uses ADP to phosphorylate L-serine to yield O-phospho-L-serine and AMP. | 0.666 |
TK1449 | tdh | TK1449 | TK0916 | Cystathionine gamma-synthase. | Threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate. To a lesser extent, also catalyzes the oxidation of L-serine; Belongs to the zinc-containing alcohol dehydrogenase family. | 0.741 |
TK1687 | TK0551 | TK1687 | TK0551 | Cysteine synthase. | D-isomer specific 2-hydroxyacid dehydrogenase. | 0.720 |
page 1 of 3