STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TK1774Amylopullulanase, GH57 family. (1100 aa)    
Predicted Functional Partners:
TK1770
Cyclomaltodextrinase.
 
   
 0.860
TK1771
ABC-type maltodextrin transport system, maltodextrin-binding periplasmic component.
 
   
 0.844
TK0977
Pullulanase type II, GH13 family.
 
   
 0.809
TK1772
ABC-type maltodextrin transport system, permease component.
     
 0.801
TK1773
ABC-type maltodextrin transport system, permease component.
       0.795
Tk-cgt
Cyclodextrin glucanotransferase, GH13 family.
 
   
 0.748
TK1775
ABC-type maltdextrin transport system, ATPase component.
       0.661
TK1884
Alpha-amylase precursor, GH13 family.
  
   
 0.641
TK1776
Hypothetical protein, conserved, UPF0146 family; Belongs to the UPF0146 family.
       0.624
glmD
Archaeal glucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion. Involved in chitin degradation.
      
 0.622
Your Current Organism:
Thermococcus kodakarensis
NCBI taxonomy Id: 69014
Other names: Pyrococcus sp. (strain KOD1), Pyrococcus sp. KOD1, T. kodakarensis KOD1, Thermococcus kodakaraensis KOD1, Thermococcus kodakarensis KOD1, Thermococcus kodakarensis str. KOD1, Thermococcus kodakarensis strain KOD1
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