STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TK1782Serine protease inhibitor Serpin homolog; Belongs to the serpin family. (426 aa)    
Predicted Functional Partners:
TK1873
Hypothetical protein, conserved.
   
 0.642
TK1781
ArgE/DapE-related deacylase.
     
 0.580
TK1780
Hypothetical protein, conserved.
       0.556
Pk-cdcA
CDC48/VCP homolog, AAA superfamily.
    
  0.463
TK1139
ATPase, AAA superfamily; Belongs to the AAA ATPase family.
    
  0.463
TK1157
CDC48/VCP homolog, AAA superfamily.
    
  0.463
TK1779
Oligopeptide transporter, OPT family.
       0.448
Your Current Organism:
Thermococcus kodakarensis
NCBI taxonomy Id: 69014
Other names: Pyrococcus sp. (strain KOD1), Pyrococcus sp. KOD1, T. kodakarensis KOD1, Thermococcus kodakaraensis KOD1, Thermococcus kodakarensis KOD1, Thermococcus kodakarensis str. KOD1, Thermococcus kodakarensis strain KOD1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.