STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_0116KEGG: gur:Gura_3588 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB. (445 aa)    
Predicted Functional Partners:
Desaf_0117
PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel; KEGG: CO dehydrogenase/acetyl-CoA synthase subunit gamma (corrinoid Fe-S protein)-like protein.
 
     0.765
Desaf_0115
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: ferredoxin.
 
   
 0.713
Desaf_1672
PFAM: Protein of unknown function DUF2318, membrane; KEGG: dap:Dacet_1965 hypothetical protein.
  
     0.487
Desaf_1713
PFAM: Aldehyde ferredoxin oxidoreductase, C-terminal; Aldehyde ferredoxin oxidoreductase, N-terminal; KEGG: dvl:Dvul_1877 aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase, N-terminal.
 
     0.472
Desaf_0315
PFAM: Aldehyde ferredoxin oxidoreductase, C-terminal; Aldehyde ferredoxin oxidoreductase, N-terminal; KEGG: dsa:Desal_3753 aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase, N-terminal.
 
     0.468
Desaf_1276
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.447
Desaf_3360
KEGG: sfu:Sfum_0795 hypothetical protein.
  
    0.442
Desaf_1161
Metal-dependent hydrolase HDOD; KEGG: dbr:Deba_0416 histidine kinase; PFAM: Metal-dependent hydrolase HDOD; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region.
  
   
 0.437
Desaf_2874
PFAM: Aldehyde ferredoxin oxidoreductase, C-terminal; Aldehyde ferredoxin oxidoreductase, N-terminal; KEGG: sfu:Sfum_4079 aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase, N-terminal.
 
     0.436
Desaf_3770
KEGG: dba:Dbac_0434 hypothetical protein.
  
     0.432
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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