STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_1090KEGG: opr:Ocepr_2130 hypothetical protein. (139 aa)    
Predicted Functional Partners:
Desaf_1091
KEGG: ava:Ava_C0139 transport-associated protein; PFAM: Transport-associated; SMART: Transport-associated and nodulation region, bacteria.
 
     0.596
Desaf_0168
KEGG: gbm:Gbem_1209 hypothetical protein.
  
     0.514
Desaf_0167
KEGG: cyn:Cyan7425_1866 hypothetical protein.
  
     0.473
Desaf_1092
PFAM: Protein of unknown function DUF2267; KEGG: hypothetical protein.
 
    
0.467
Desaf_0878
KEGG: azl:AZL_c04230 hypothetical protein.
  
     0.462
Desaf_1536
PFAM: Protein of unknown function DUF2383; KEGG: gem:GM21_0112 hypothetical protein.
  
     0.441
Desaf_1047
PFAM: Phosphoribosyltransferase; KEGG: mev:Metev_1572 phosphoribosyltransferase.
 
     0.406
Desaf_1848
KEGG: sat:SYN_00323 M50 family membrane endopeptidase; PFAM: Peptidase M50; Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; Belongs to the peptidase M50B family.
  
     0.405
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.