STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_1336PFAM: Cytochrome P450; KEGG: mil:ML5_3421 cytochrome P450. (419 aa)    
Predicted Functional Partners:
Desaf_1333
PFAM: AMP-dependent synthetase/ligase; Phosphopantetheine-binding; Phospholipid/glycerol acyltransferase; KEGG: nhl:Nhal_3081 AMP-dependent synthetase and ligase; SMART: Phospholipid/glycerol acyltransferase.
  
 0.928
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.904
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.889
Desaf_1514
KEGG: tkm:TK90_1429 phosphoesterase PA-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase.
 
 
 0.871
Desaf_1408
KEGG: dsa:Desal_1306 phosphoesterase PA-phosphatase related; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase.
   
 0.847
Desaf_2534
DNA sulfur modification protein DndD; KEGG: gur:Gura_2475 hypothetical protein; TIGRFAM: DNA sulphur modification protein DndD; PFAM: RecF/RecN/SMC protein, N-terminal.
    
 0.842
Desaf_0568
KEGG: dma:DMR_35930 hypothetical protein.
    
 0.824
Desaf_0996
Long-chain-fatty-acid--CoA ligase; KEGG: dvm:DvMF_2357 AMP-binding domain protein; PFAM: AMP-dependent synthetase/ligase.
  
 0.783
Desaf_1833
KEGG: nml:Namu_4497 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
  
 0.783
Desaf_2909
KEGG: dsa:Desal_0743 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
  
 0.783
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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