STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_1811KEGG: mta:Moth_1179 ferredoxin-dependent glutamate synthase. (545 aa)    
Predicted Functional Partners:
Desaf_3067
KEGG: dba:Dbac_1640 glutamate synthase (ferredoxin); PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal.
  
 
 0.927
Desaf_0412
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Cysteine-rich region, CCG; KEGG: dae:Dtox_3439 protein of unknown function DUF224 cysteine-rich region domain protein.
  
 
 0.832
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 
 0.830
rnfB-2
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 
 0.830
Desaf_1805
TIGRFAM: Glutamate synthase (NADPH), homotetrameric; KEGG: dvl:Dvul_0766 putative oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
 
 0.821
Desaf_2454
KEGG: dvl:Dvul_1521 putative glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
 
 0.821
Desaf_3075
PFAM: Glutamine amidotransferase, class-II; KEGG: dde:Dde_1815 glutamate synthase (NADPH) GltB1 subunit.
 
 
 0.780
Desaf_3074
PFAM: Glutamate synthase, alpha subunit, C-terminal; KEGG: dde:Dde_1816 glutamate synthase (NADPH) GltB3 subunit.
 
 
 0.607
Desaf_2962
PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: sfu:Sfum_0223 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
  
     0.599
Desaf_1812
KEGG: dba:Dbac_2294 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; SMART: ATP-binding region, ATPase-like.
     
 0.534
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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