STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_1864KEGG: formate dehydrogenase; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup. (386 aa)    
Predicted Functional Partners:
Desaf_2842
TIGRFAM: Carbon-monoxide dehydrogenase, catalytic subunit; KEGG: drt:Dret_1234 carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane.
   
 0.980
Desaf_1863
Response regulator receiver protein; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Signal transduction response regulator, receiver region; KEGG: response regulator receiver.
 
 
 0.973
Desaf_1866
PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: drt:Dret_0421 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
 
 0.971
Desaf_1865
PFAM: Methyl-viologen-reducing hydrogenase, delta subunit; KEGG: drt:Dret_0420 methyl-viologen-reducing hydrogenase delta subunit.
 
 
 0.965
Desaf_0420
Formate dehydrogenase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; manually curated; Contains selenocysteine; KEGG: dsa:Desal_2659 formate dehydrogenase, alpha subunit; TIGRFAM: Formate dehydrogenase, alpha subunit, anaerobic; Twin-arginine translocation pathway, signal sequence.
  
 0.960
Desaf_1800
Formate dehydrogenase, alpha subunit; Contains selenocysteine; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; manually curated; Prodigal; KEGG: dba:Dbac_0971 formate dehydrogenase, alpha subunit; TIGRFAM: Formate dehydrogenase, alpha subunit, anaerobic; Twin-arginine translocation pathway, signal sequence; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.960
Desaf_1861
KEGG: CoB--CoM heterodisulfide reductase; PFAM: Cysteine-rich region, CCG.
 
 
 0.960
Desaf_2879
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal; KEGG: dsa:Desal_0598 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
  
 
0.937
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
    
 0.923
Desaf_0419
Fe-S-cluster-containing hydrogenase component protein; KEGG: dsa:Desal_2658 FdhB2.
 
  
 0.920
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.