STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_2236KEGG: dsa:Desal_0433 type VI secretion protein, VC_A0114 family; TIGRFAM: Protein of unknown function DUF876, bacterial; PFAM: Protein of unknown function DUF876, bacterial. (462 aa)    
Predicted Functional Partners:
Desaf_2237
KEGG: gbm:Gbem_3046 type VI secretion system protein; TIGRFAM: Type IV / VI secretion system, DotU; PFAM: Type IV / VI secretion system, DotU.
 
  
 0.980
Desaf_2244
KEGG: dsa:Desal_0422 type VI secretion protein, VC_A0110 family; TIGRFAM: Type VI secretion system, VCA0110; PFAM: Type VI secretion system, VCA0110.
 
 
 0.973
Desaf_2238
KEGG: gme:Gmet_0274 hypothetical protein.
 
  
 0.972
Desaf_2240
KEGG: dsa:Desal_0418 type VI secretion protein, VC_A0107 family; TIGRFAM: Uncharacterized conserved protein UCP028301; PFAM: Uncharacterized conserved protein UCP028301.
 
  
 0.965
Desaf_2241
KEGG: dsa:Desal_0419 type VI secretion protein, EvpB/VC_A0108 family; TIGRFAM: Protein of unknown function DUF877; PFAM: Protein of unknown function DUF877.
 
  
 0.905
Desaf_2235
TIGRFAM: Type VI secretion system, lipoprotein VCA0113; KEGG: gsu:GSU0428 putative lipoprotein.
  
  
 0.899
Desaf_2245
KEGG: dsa:Desal_0423 type VI secretion protein, VC_A0111 family; TIGRFAM: Protein of unknown function DUF1305; PFAM: Protein of unknown function DUF1305.
 
  
 0.892
Desaf_2248
KEGG: dsa:Desal_0425 rhs element Vgr protein; TIGRFAM: Rhs element Vgr protein; Rhs element Vgr protein, subgroup; PFAM: Rhs element Vgr protein.
 
  
 0.880
Desaf_2242
KEGG: dsa:Desal_0420 type VI secretion system effector, Hcp1 family; TIGRFAM: Type VI secretion system effector, Hcp1; PFAM: Virulence factor, secretion apparatus.
 
  
 0.855
Desaf_2249
PFAM: Protein of unknown function DUF2169; Pentapeptide repeat; KEGG: dsa:Desal_0426 pentapeptide repeat protein.
 
  
 0.817
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.