STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhfAPutative transporter. (461 aa)    
Predicted Functional Partners:
yhaA
Putative amidohydrolase.
     
 0.852
yhgC
Conserved hypothetical protein.
     
 0.850
gerPB
Probable spore germination protein gerPB.
  
    0.574
gerPD
Probable spore germination protein gerPD.
  
    0.556
gerPE
Probable spore germination protein gerPE.
  
    0.458
gerPA
Probable spore germination protein gerPA;, Spore germination protein gerPA/gerPF.
  
    0.443
gerPC
Probable spore germination protein gerPC;, Spore germination protein GerPC.
  
     0.430
gerPF
Probable spore germination protein gerPF;, Spore germination protein gerPA/gerPF.
  
    0.402
rsgI
Anti-sigma factor; 'unknown; Similar to unknown proteins from B. subtilis'.
  
     0.400
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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