STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bioBBiotin synthase. (339 aa)    
Predicted Functional Partners:
bioD
Dethiobiotin synthetase.
 
 
 0.999
bioK
Lysine-8-amino-7-oxononanoate aminotransferase.
  
 0.991
bioF
8-amino-7-oxononanoate synthase.
  
 0.982
bioW
6-carboxyhexanoate-CoA ligase (pimeloyl-CoA synthase).
 
  
 0.981
birA
Biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor.
  
 
 0.947
bioI
Cytochrome P450 for pimelic acid formation for biotin biosynthesis.
  
  
 0.945
kbl
2-amino-3-ketobutyrate CoA ligase (glycine acetyl transferase).
  
 0.774
yhxA
Similar to adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Glutamate-1-semialdehyde 2,1-aminomutase; GSA; Glutamate-1-semialdehyde aminotransferase; GSA-AT;, Aminotransferase class-III, Aminotransferase class-III, bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase.
 
  
 0.740
yodT
Putative aminovalerate aminotransferase.
 
  
 0.722
thiC
Biosynthesis of the pyrimidine moiety from 5-aminoimidazole ribotide (AIR) (thiamin biosynthesis).
 
  
 0.692
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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