STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3NK91_GASACTectonin beta-propeller repeat containing 2. (1377 aa)    
Predicted Functional Partners:
G3NKF9_GASAC
Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.
    
 
 0.995
G3PRQ7_GASAC
Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.
   
 
 0.927
G3PHS2_GASAC
VPS18 core subunit of CORVET and HOPS complexes.
    
 
 0.832
G3P5I5_GASAC
Ectopic P-granules autophagy protein 5 homolog (C. elegans).
   
  
 0.681
G3Q9K7_GASAC
Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family.
   
  
 0.667
G3PSA9_GASAC
WD repeat domain 45.
   
  
 0.646
HPS6
HPS6 biogenesis of lysosomal organelles complex 2 subunit 3.
    
 
 0.644
G3PIW0_GASAC
Trafficking protein particle complex 12.
   
  
 0.631
G3Q1G7_GASAC
RB1-inducible coiled-coil 1.
   
  
 0.622
G3Q8N1_GASAC
Phospholipase A2, group VI (cytosolic, calcium-independent).
   
  
 0.615
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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