STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEA47480.1Y414 protein; COGs: COG1423 ATP-dependent DNA ligase homolog of eukaryotic ligase III; InterPro IPR012310: IPR001072; KEGG: apo:Arcpr_1305 ATP dependent DNA ligase; PFAM: DNA ligase, ATP-dependent, central; SPTR: ATP dependent DNA ligase; TIGRFAM: Uncharacterised protein family MJ0414; PFAM: ATP dependent DNA ligase domain; TIGRFAM: RNA ligase, Pab1020 family. (380 aa)    
Predicted Functional Partners:
AEA47481.1
Putative signal transduction protein with CBS domains; COGs: COG2524 transcriptional regulator protein; InterPro IPR000644; KEGG: fpl:Ferp_1329 putative signal transduction protein with CBS domains; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; SPTR: Putative signal transduction protein with CBS domains; PFAM: CBS domain.
       0.854
AEA47479.1
Protein of unknown function DUF1464; COGs: COG2441 butyrate kinase; InterPro IPR009927; KEGG: afu:AF0850 hypothetical protein; PFAM: Protein of unknown function DUF1464; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1464).
 
     0.826
AEA47482.1
COGs: COG2905 signal-transduction protein containing cAMP-binding and CBS domains; InterPro IPR000644; KEGG: apo:Arcpr_1303 putative signal transduction protein with CBS domains; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; SPTR: Putative signal transduction protein with CBS domains; PFAM: CBS domain.
       0.811
AEA47788.1
UPF0278 protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family.
 
     0.794
AEA47626.1
Protein of unknown function DUF61; COGs: COG2083 conserved hypothetical protein; InterPro IPR002746; KEGG: afu:AF0460 hypothetical protein; PFAM: Uncharacterised protein family UPF0216; SPTR: UPF0216 protein AF_0460; PFAM: Protein of unknown function DUF61; Belongs to the UPF0216 family.
  
     0.608
AEA47278.1
Protein of unknown function DUF166; COGs: COG1810 conserved hypothetical protein; InterPro IPR003745; KEGG: afu:AF1687 hypothetical protein; PFAM: Protein of unknown function DUF166; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized ArCR, COG1810.
 
     0.543
AEA47828.1
COGs: COG1223 ATPase (AAA+ superfamily); InterPro IPR003959: IPR003593; KEGG: afu:AF1285 cell division protein CDC48; PFAM: ATPase, AAA-type, core; PRIAM: Microtubule-severing ATPase; SMART: ATPase, AAA+ type, core; SPTR: Cell division control protein, AAA family, putative; PFAM: ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family.
  
     0.503
AEA47537.1
COGs: COG0417 DNA polymerase elongation subunit (family B); InterPro IPR006133: IPR006134: IPR004578: IPR006172; KEGG: fpl:Ferp_1482 DNA polymerase Pol2; PFAM: DNA-directed DNA polymerase, family B, conserved region; DNA-directed DNA polymerase, family B, exonuclease domain; SMART: DNA-directed DNA polymerase, family B; SPTR: DNA polymerase; TIGRFAM: DNA-directed DNA polymerase, family B, pol2; PFAM: DNA polymerase family B; DNA polymerase family B, exonuclease domain; TIGRFAM: DNA polymerase (pol2).
 
    0.485
AEA48018.1
Protein of unknown function DUF98; COGs: COG3161 4-hydroxybenzoate synthetase (chorismate lyase); InterPro IPR002800; KEGG: afu:AF1396 hypothetical protein; PFAM: Protein of unknown function DUF98; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF98).
  
     0.469
AEA47483.1
Small multi-drug export protein; COGs: COG2426 membrane protein; InterPro IPR009577; KEGG: afu:AF1696 small multidrug export protein (QacE); PFAM: Putative small multi-drug export; SPTR: Small multidrug export protein (QacE); PFAM: Putative small multi-drug export protein.
       0.458
Your Current Organism:
Archaeoglobus veneficus
NCBI taxonomy Id: 693661
Other names: A. veneficus SNP6, Archaeoglobus veneficus DSM 11195, Archaeoglobus veneficus SNP6, Archaeoglobus veneficus str. SNP6, Archaeoglobus veneficus strain SNP6
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