STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_26090MatE efflux family protein. (587 aa)    
Predicted Functional Partners:
OBV_26100
Putative antagonist protein; Belongs to the anti-sigma-factor antagonist family.
       0.773
OBV_40280
MatE efflux family protein; Fragment.
  
     0.772
OBV_33640
MatE efflux family protein.
  
     0.770
OBV_40290
MatE efflux family protein; Fragment.
  
     0.763
OBV_26050
Hypothetical protein.
       0.727
OBV_26060
Hypothetical protein.
       0.727
OBV_26070
Putative phosphoprotein phosphatase.
       0.727
OBV_26080
Putative phosphoprotein phosphatase.
       0.727
OBV_26110
Putative ATPase.
       0.701
OBV_26120
Hypothetical protein.
       0.614
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.