STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBV_38120Putative hydrolase. (262 aa)    
Predicted Functional Partners:
OBV_38110
Hypothetical protein.
 
    0.687
OBV_38100
Putative transporter.
       0.575
OBV_03210
Putative hydrolase.
  
     0.564
OBV_33930
Hypothetical protein.
     
 0.465
OBV_34850
Hypothetical protein.
     
 0.465
gabT
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.446
OBV_38080
Putative transporter.
  
    0.440
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
   
 
 0.431
OBV_38090
Putative transporter.
       0.428
OBV_38130
Putative GntR family transcriptional regulator.
       0.415
Your Current Organism:
Oscillibacter valericigenes
NCBI taxonomy Id: 693746
Other names: O. valericigenes Sjm18-20, Oscillibacter valericigenes NBRC 101213, Oscillibacter valericigenes Sjm18-20
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